Spot the difference … (I understand why not to post the complete report)
Hope that helps.
cat /proc/interrupts (without PCIe graphics card)
21: 0 1 IO-APIC-fasteoi ehci_hcd:usb2
22: 338 69537 IO-APIC-fasteoi ehci_hcd:usb1, snd_hda_intel
NMI: 14 18 Non-maskable interrupts
LOC: 332134 425862 Local timer interrupts
PMI: 14 18 Performance monitoring interrupts
RES: 254946 213594 Rescheduling interrupts
CAL: 2036 1592 Function call interrupts
TLB: 11337 5692 TLB shootdowns
MCP: 17 17 Machine check polls
cat /proc/interrupts (with PCIe graphics card)
17: 0 139 IO-APIC-fasteoi snd_hda_intel
18: 23 12401 IO-APIC-fasteoi nvidia
21: 0 216 IO-APIC-fasteoi ehci_hcd:usb2, snd_hda_intel
22: 21 5536 IO-APIC-fasteoi ehci_hcd:usb1
NMI: 2 3 Non-maskable interrupts
LOC: 49263 65772 Local timer interrupts
PMI: 2 3 Performance monitoring interrupts
RES: 64365 55749 Rescheduling interrupts
CAL: 2645 1495 Function call interrupts
TLB: 692 653 TLB shootdowns
MCP: 1 1 Machine check polls
dmesg (without PCIe graphics card)
12.214342] Registered led device: rt2500pci-phy0::radio
12.214359] Registered led device: rt2500pci-phy0::quality
12.244282] input: HDA NVidia Headphone as /devices/pci0000:00/0000:00:07.0/sound/card0/input6
12.245519] forcedeth: Reverse Engineered nForce ethernet driver. Version 0.64.
12.245751] ACPI: PCI Interrupt Link [LMAC] enabled at IRQ 21
12.245757] forcedeth 0000:00:0a.0: PCI INT A -> Link[LMAC] -> GSI 21 (level, low) -> IRQ 21
12.245761] forcedeth 0000:00:0a.0: setting latency timer to 64
12.767722] forcedeth 0000:00:0a.0: ifname eth0, PHY OUI 0x50ef @ 1, addr 00:1e:90:f8:fc:a4
12.767727] forcedeth 0000:00:0a.0: highdma pwrctl mgmt lnktim msi desc-v3
12.768905] i2c i2c-0: nForce2 SMBus adapter at 0x2d00
12.768924] i2c i2c-1: nForce2 SMBus adapter at 0x2e00
12.770029] k8temp 0000:00:18.3: Temperature readouts might be wrong - check erratum #141
12.771214] EDAC amd64: DRAM ECC disabled.
12.771222] EDAC amd64: ECC disabled in the BIOS or no ECC capability, module will not load.
12.771224] Either enable ECC checking or force module loading by setting ‘ecc_enable_override’.
12.771225] (Note that use of the override may cause unknown side effects.)
13.257098] ifup[739]: Service network not started and mode ‘auto’ -> skipping
13.257109] ifup[736]: Service network not started and mode ‘auto’ -> skipping
13.783580] nvidia: module license ‘NVIDIA’ taints kernel.
13.783584] Disabling lock debugging due to kernel taint
13.928781] cfg80211: World regulatory domain updated:
13.928785] cfg80211: (start_freq - end_freq @ bandwidth), (max_antenna_gain, max_eirp)
13.928788] cfg80211: (2402000 KHz - 2472000 KHz @ 40000 KHz), (300 mBi, 2000 mBm)
13.928790] cfg80211: (2457000 KHz - 2482000 KHz @ 20000 KHz), (300 mBi, 2000 mBm)
13.928793] cfg80211: (2474000 KHz - 2494000 KHz @ 20000 KHz), (300 mBi, 2000 mBm)
13.928795] cfg80211: (5170000 KHz - 5250000 KHz @ 40000 KHz), (300 mBi, 2000 mBm)
13.928797] cfg80211: (5735000 KHz - 5835000 KHz @ 40000 KHz), (300 mBi, 2000 mBm)
dmesg (with PCIe graphics card)
12.176151] Registered led device: rt2500pci-phy0::radio
12.176169] Registered led device: rt2500pci-phy0::quality
12.494724] forcedeth 0000:00:0a.0: ifname eth0, PHY OUI 0x50ef @ 1, addr 00:1e:90:f8:fc:a4
12.494729] forcedeth 0000:00:0a.0: highdma pwrctl mgmt lnktim msi desc-v3
13.131427] cfg80211: World regulatory domain updated:
13.131431] cfg80211: (start_freq - end_freq @ bandwidth), (max_antenna_gain, max_eirp)
13.131434] cfg80211: (2402000 KHz - 2472000 KHz @ 40000 KHz), (300 mBi, 2000 mBm)
13.131436] cfg80211: (2457000 KHz - 2482000 KHz @ 20000 KHz), (300 mBi, 2000 mBm)
13.131438] cfg80211: (2474000 KHz - 2494000 KHz @ 20000 KHz), (300 mBi, 2000 mBm)
13.131440] cfg80211: (5170000 KHz - 5250000 KHz @ 40000 KHz), (300 mBi, 2000 mBm)
13.131442] cfg80211: (5735000 KHz - 5835000 KHz @ 40000 KHz), (300 mBi, 2000 mBm)
13.354042] ifup[692]: Service network not started and mode ‘auto’ -> skipping
13.354052] ifup[690]: Service network not started and mode ‘auto’ -> skipping
14.020217] nvidia: module license ‘NVIDIA’ taints kernel.
14.020221] Disabling lock debugging due to kernel taint
79.693903] wlan0: direct probe to 00:24:17:64:9c:d1 (try 1/3)
79.893135] wlan0: direct probe to 00:24:17:64:9c:d1 (try 2/3)
80.093061] wlan0: direct probe to 00:24:17:64:9c:d1 (try 3/3)
80.293071] wlan0: direct probe to 00:24:17:64:9c:d1 timed out
98.030757] phy0 -> rt2x00queue_write_tx_frame: Error - Dropping frame due to full tx queue 0.
99.143366] phy0 -> rt2x00queue_write_tx_frame: Error - Dropping frame due to full tx queue 0.
(this continues for another 20 lines)
There were a few other smaller differences but I believe this was the important part.