I am having issues with gnome and I am not sure where I should start looking. The basic problem is that standard Gnome applications are not fully displaying. Elements of the screen are missing. Some things will appear if I mouse over them but this makes things very difficult to use.
Here are some examples:
Nautilus:
Settings:
This issue appeared quite some time ago during one of the system updates. I was hoping that the issue would be resolved as part of updates as I roll along.
My system is using an AMD processor with an NVidea GTX760 video card using the NVidia drivers. (Not Noveau)
Other than the display issue the system is stable and I have no other complaints/issues.
Here is what I found in the log:
Jul 25 13:00:37 localhost dbus-daemon[2648]: [session uid=1000 pid=2648] Successfully activated service ‘com.intel.dleyna-renderer’
Jul 25 13:00:37 localhost dleyna-renderer-service[76286]: Calling GetRenderers method
Jul 25 13:00:37 localhost dbus-daemon[2648]: [session uid=1000 pid=2648] Successfully activated service ‘org.gnome.Notes.SearchProvider’
Jul 25 13:00:37 localhost gnome-character[76176]: JS LOG: Characters Application started
Jul 25 13:00:37 localhost kernel: bijiben-shell-s[76180]: segfault at 7fca04ddcf62 ip 00007fce15d7d07d sp 00007ffcbd8cb888 error 4 in libgobject-2.0.so.0.8000.4[7fce15d50000+35000] likely on CPU 2 (core 2, socket 1)
Jul 25 13:00:37 localhost kernel: Code: 02 48 8d 05 65 63 02 00 48 8b 34 e8 e9 2b ff ff ff 66 66 2e 0f 1f 84 00 00 00 00 00 90 48 85 ff 74 4b 48 8b 07 48 85 c0 74 43 <48> 8b 00 48 3d fc 03 00 00 77 28 48 8d 15 31 63 02 00 48 c1 e8 02
Jul 25 13:00:37 localhost dbus-daemon[2648]: [session uid=1000 pid=2648] Activating service name=‘org.gnome.NautilusPreviewer’ requested by ‘:1.271’ (uid=1000 pid=76172 comm=“/usr/bin/nautilus --gapplication-service”)
Jul 25 13:00:37 localhost systemd[1]: Started Process Core Dump (PID 76317/UID 0).
Jul 25 13:00:37 localhost systemd[1]: Started Pass systemd-coredump journal entries to relevant user for potential DrKonqi handling.
Jul 25 13:00:37 localhost dbus-daemon[1181]: [system] Activating via systemd: service name=‘org.freedesktop.PackageKit’ unit=‘packagekit.service’ requested by ‘:1.103’ (uid=1000 pid=2982 comm=“/usr/bin/gnome-software --gapplication-service”)
Jul 25 13:00:37 localhost systemd[1]: Starting PackageKit Daemon…
Jul 25 13:00:37 localhost PackageKit[76338]: daemon start
Jul 25 13:00:37 localhost dbus-daemon[1181]: [system] Successfully activated service ‘org.freedesktop.PackageKit’
Jul 25 13:00:37 localhost systemd[1]: Started PackageKit Daemon.
Jul 25 13:00:38 localhost dbus-daemon[2648]: [session uid=1000 pid=2648] Successfully activated service ‘org.gnome.NautilusPreviewer’
Jul 25 13:00:38 localhost systemd-coredump[76319]: Process 76180 (bijiben-shell-s) of user 1000 dumped core.
Stack trace of thread 76180:
#0 0x00007fce15d7d07d g_type_check_instance_is_fundamentally_a (libgobject-2.0.so.0 + 0x3d07d)
#1 0x00007fce15d5d68b g_object_unref (libgobject-2.0.so.0 + 0x1d68b)
#2 0x00007fce15c4b7f9 n/a (libglib-2.0.so.0 + 0x5b7f9)
#3 0x00007fce15c4d3b6 n/a (libglib-2.0.so.0 + 0x5d3b6)
#4 0x00007fce15c4d7df n/a (libglib-2.0.so.0 + 0x5d7df)
#5 0x00007fce15c4f3a8 n/a (libglib-2.0.so.0 + 0x5f3a8)
#6 0x00007fce15c4fa5c g_main_context_iteration (libglib-2.0.so.0 + 0x5fa5c)
#7 0x00007fce15e91aed g_application_run (libgio-2.0.so.0 + 0xe9aed)
#8 0x000055efa529bd17 main (bijiben-shell-search-provider + 0xfd17)
#9 0x00007fce0d82a1f0 __libc_start_call_main (libc.so.6 + 0x2a1f0)
#10 0x00007fce0d82a2b9 __libc_start_main@@GLIBC_2.34 (libc.so.6 + 0x2a2b9)
#11 0x000055efa529bd55 _start (bijiben-shell-search-provider + 0xfd55)
Stack trace of thread 76278:
#0 0x00007fce0d911bcd syscall (libc.so.6 + 0x111bcd)
#1 0x00007fce15ca9d70 g_cond_wait (libglib-2.0.so.0 + 0xb9d70)
#2 0x00007fce15c180fb n/a (libglib-2.0.so.0 + 0x280fb)
#3 0x00007fce15c7cce1 n/a (libglib-2.0.so.0 + 0x8cce1)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76310:
#0 0x00007fce0dae7e2c n/a (libsqlite3.so.0 + 0x57e2c)
#1 0x00007fce0dbb9e81 n/a (libsqlite3.so.0 + 0x129e81)
#2 0x00007fce0db4cd07 n/a (libsqlite3.so.0 + 0xbcd07)
#3 0x00007fce0db16de0 n/a (libsqlite3.so.0 + 0x86de0)
#4 0x00007fce0db173c2 n/a (libsqlite3.so.0 + 0x873c2)
#5 0x00007fce0db0f43a sqlite3_exec (libsqlite3.so.0 + 0x7f43a)
#6 0x00007fce0db17939 n/a (libsqlite3.so.0 + 0x87939)
#7 0x00007fce0db17ccc n/a (libsqlite3.so.0 + 0x87ccc)
#8 0x00007fce0db17d0f n/a (libsqlite3.so.0 + 0x87d0f)
#9 0x00007fce0db182ed n/a (libsqlite3.so.0 + 0x882ed)
#10 0x00007fce0dbb8906 n/a (libsqlite3.so.0 + 0x128906)
#11 0x00007fce0db4cd07 n/a (libsqlite3.so.0 + 0xbcd07)
#12 0x00007fce0db16de0 n/a (libsqlite3.so.0 + 0x86de0)
#13 0x00007fce0db17db3 n/a (libsqlite3.so.0 + 0x87db3)
#14 0x00007fce0db1cfb6 sqlite3_prepare_v2 (libsqlite3.so.0 + 0x8cfb6)
#15 0x00007fce15fe48d5 n/a (libtracker-sparql-3.0.so.0 + 0x4c8d5)
#16 0x00007fce15fe4ab3 n/a (libtracker-sparql-3.0.so.0 + 0x4cab3)
#17 0x00007fce15fe5f6c n/a (libtracker-sparql-3.0.so.0 + 0x4df6c)
#18 0x00007fce15fe6367 n/a (libtracker-sparql-3.0.so.0 + 0x4e367)
#19 0x00007fce1601930f n/a (libtracker-sparql-3.0.so.0 + 0x8130f)
#20 0x00007fce16023d09 n/a (libtracker-sparql-3.0.so.0 + 0x8bd09)
#21 0x00007fce15fbbdb1 tracker_sparql_connection_query (libtracker-sparql-3.0.so.0 + 0x23db1)
#22 0x00007fce1602362a n/a (libtracker-sparql-3.0.so.0 + 0x8b62a)
#23 0x00007fce15c7cde2 n/a (libglib-2.0.so.0 + 0x8cde2)
#24 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#25 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#26 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76304:
#0 0x00007fce0d90578f __poll (libc.so.6 + 0x10578f)
#1 0x00007fce15c4f34f n/a (libglib-2.0.so.0 + 0x5f34f)
#2 0x00007fce15c4fa5c g_main_context_iteration (libglib-2.0.so.0 + 0x5fa5c)
#3 0x00007fce08b3e99d n/a (libdconfsettings.so + 0x699d)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76306:
#0 0x00007fce0d911bcd syscall (libc.so.6 + 0x111bcd)
#1 0x00007fce15ca9f1c g_cond_wait_until (libglib-2.0.so.0 + 0xb9f1c)
#2 0x00007fce15c180d3 n/a (libglib-2.0.so.0 + 0x280d3)
#3 0x00007fce15c7ce3a n/a (libglib-2.0.so.0 + 0x8ce3a)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76258:
#0 0x00007fce0d90578f __poll (libc.so.6 + 0x10578f)
#1 0x00007fce15c4f34f n/a (libglib-2.0.so.0 + 0x5f34f)
#2 0x00007fce15c4fa5c g_main_context_iteration (libglib-2.0.so.0 + 0x5fa5c)
#3 0x00007fce15c4faa1 n/a (libglib-2.0.so.0 + 0x5faa1)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76307:
#0 0x00007fce0d90578f __poll (libc.so.6 + 0x10578f)
#1 0x00007fce15c4f34f n/a (libglib-2.0.so.0 + 0x5f34f)
#2 0x00007fce15c4fc7f g_main_loop_run (libglib-2.0.so.0 + 0x5fc7f)
#3 0x00007fce15070713 n/a (libecal-2.0.so.3 + 0x20713)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76259:
#0 0x00007fce0d90578f __poll (libc.so.6 + 0x10578f)
#1 0x00007fce15c4f34f n/a (libglib-2.0.so.0 + 0x5f34f)
#2 0x00007fce15c4fc7f g_main_loop_run (libglib-2.0.so.0 + 0x5fc7f)
#3 0x00007fce15ecf2e6 n/a (libgio-2.0.so.0 + 0x1272e6)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76299:
#0 0x00007fce0d911bcd syscall (libc.so.6 + 0x111bcd)
#1 0x00007fce15ca9d70 g_cond_wait (libglib-2.0.so.0 + 0xb9d70)
#2 0x00007fce15c180fb n/a (libglib-2.0.so.0 + 0x280fb)
#3 0x00007fce15c7cce1 n/a (libglib-2.0.so.0 + 0x8cce1)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
Stack trace of thread 76257:
#0 0x00007fce0d911bcd syscall (libc.so.6 + 0x111bcd)
#1 0x00007fce15ca9d70 g_cond_wait (libglib-2.0.so.0 + 0xb9d70)
#2 0x00007fce15c180fb n/a (libglib-2.0.so.0 + 0x280fb)
#3 0x00007fce15c7cac2 n/a (libglib-2.0.so.0 + 0x8cac2)
#4 0x00007fce15c7c32e n/a (libglib-2.0.so.0 + 0x8c32e)
#5 0x00007fce0d892ba2 start_thread (libc.so.6 + 0x92ba2)
#6 0x00007fce0d91400c __clone3 (libc.so.6 + 0x11400c)
ELF object binary architecture: AMD x86-64
Jul 25 13:00:38 localhost systemd[1]: systemd-coredump@12-76317-0.service: Deactivated successfully.
Jul 25 13:00:38 localhost gnome-shell[2823]: Received error from D-Bus search provider org.gnome.Notes.desktop: Gio.DBusError: GDBus.Error:org.freedesktop.DBus.Error.NoReply: Message recipient disconnected from message bus without replying
Jul 25 13:00:38 localhost drkonqi-coredump-processor[76324]: “/usr/libexec/bijiben-shell-search-provider” 76180 “/var/lib/systemd/coredump/core.bijiben-shell-s.1000.42a102fa3ddd4c4bb9436de472199dc9.76180.1721930437000000.zst”
Jul 25 13:00:38 localhost systemd[1]: drkonqi-coredump-processor@12-76317-0.service: Deactivated successfully.
Jul 25 13:00:38 localhost systemd[2538]: Started Launch DrKonqi for a systemd-coredump crash (PID 76324/UID 0).
Jul 25 13:00:38 localhost drkonqi-coredump-launcher[76411]: Unable to find file for pid 76180 expected at “kcrash-metadata/bijiben-shell-search-provider.42a102fa3ddd4c4bb9436de472199dc9.76180.ini”
Jul 25 13:00:38 localhost drkonqi-coredump-launcher[76411]: Nothing handled the dump 
Jul 25 13:00:38 localhost nautilus[76172]: connect() failed
Jul 25 13:00:39 localhost systemd[2538]: Started Application launched by gnome-shell.
Jul 25 13:00:39 localhost messages.desktop[76447]: No permissions.
Jul 25 13:00:39 localhost PackageKit[76338]: resolve transaction /1_deccdded from uid 1000 finished with success after 2023ms
Jul 25 13:00:39 localhost nautilus[76172]: connect() failed
Jul 25 13:00:40 localhost messages.desktop[76450]: WARNING: Nokogiri was built against libxml version 2.11.6, but has dynamically loaded 2.12.8
Jul 25 13:00:40 localhost nautilus[76172]: connect() failed
Where do I begin to look to determine what may be going on?
