Can't update packages from terminal and GNOME Package Updater application

Hi everyone,

I try to update packages from terminal command “zypper up”, but it shows this:

linux-0k86:/home/andranik # zypper up
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Education/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Autoselecting 'r' after 26 seconds. i
Do you want to disable the repository Education permanently? [yes/no] (no): no
Skipping repository 'Education' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/mozilla/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/mozilla/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
i
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/mozilla/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Do you want to disable the repository Mozilla permanently? [yes/no] (no): no
Skipping repository 'Mozilla' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Virtualization/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Virtualization/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Autoselecting 'r' after 12 seconds. i
Do you want to disable the repository Virtualization permanently? [yes/no] (no): no
Skipping repository 'Virtualization' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Emulators:/Wine/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Autoselecting 'r' after 25 seconds. 
Do you want to disable the repository Wine permanently? [yes/no] (no): no
Skipping repository 'Wine' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/distribution/leap/42.1/repo/non-oss/content'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/distribution/leap/42.1/repo/non-oss/content'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/distribution/leap/42.1/repo/non-oss/content'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
i
Timeout exceeded when accessing 'http://download.opensuse.org/distribution/leap/42.1/repo/non-oss/content'.

Abort, retry, ignore? [a/r/i] (a): 
Do you want to disable the repository Main Repository (NON-OSS) permanently? [yes/no] (no): no
Skipping repository 'Main Repository (NON-OSS)' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/update/leap/42.1/non-oss/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Autoselecting 'r' after 18 seconds. 
Do you want to disable the repository Update Repository (Non-Oss) permanently? [yes/no] (no): no
Skipping repository 'Update Repository (Non-Oss)' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/distribution/leap/42.1/repo/oss/content'.

Abort, retry, ignore? [a/r/i] (r): 
Autoselecting 'r' after 4 seconds. i
Do you want to disable the repository Main Repository (OSS) permanently? [yes/no] (no): no
Skipping repository 'Main Repository (OSS)' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/update/leap/42.1/oss/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
i
Timeout exceeded when accessing 'http://download.opensuse.org/update/leap/42.1/oss/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Do you want to disable the repository Main Update Repository permanently? [yes/no] (no): no
Skipping repository 'Main Update Repository' because of the above error.
Timeout exceeded when accessing 'http://ftp.gwdg.de/pub/linux/packman/suse/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Autoselecting 'r' after 28 seconds. i
Do you want to disable the repository Packman Repository permanently? [yes/no] (no): no
Skipping repository 'Packman Repository' because of the above error.
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/openSUSE:/13.2:/Update/standard/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/openSUSE:/13.2:/Update/standard/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/openSUSE:/13.2:/Update/standard/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/openSUSE:/13.2:/Update/standard/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (a): 
Trying again...
ABORT request: Aborting requested by user
linux-0k86:/home/andranik # 


It shows error with repos, but I have checked every repo – they are work.
Nothing more than that packages upgrades from YAST (GUI).

Here is my list of repos:

#  | Alias                               | Name                                    | Enabled | GPG Check | Refresh
---+-------------------------------------+-----------------------------------------+---------+-----------+--------
 1 | Education                           | Education                               | Yes     | (r ) Yes  | Yes    
 2 | Mozilla                             | Mozilla                                 | Yes     | (r ) Yes  | Yes    
 3 | Virtualization                      | Virtualization                          | Yes     | (r ) Yes  | Yes    
 4 | Wine                                | Wine                                    | Yes     | (r ) Yes  | Yes    
 5 | download.opensuse.org-non-oss       | Main Repository (NON-OSS)               | Yes     | (r ) Yes  | Yes    
 6 | download.opensuse.org-non-oss_1     | Update Repository (Non-Oss)             | Yes     | (r ) Yes  | Yes    
 7 | download.opensuse.org-oss           | Main Repository (OSS)                   | Yes     | (r ) Yes  | Yes    
 8 | download.opensuse.org-oss_1         | Main Update Repository                  | Yes     | (r ) Yes  | Yes    
 9 | ftp.gwdg.de-suse                    | Packman Repository                      | Yes     | (r ) Yes  | Yes    
10 | http-download.opensuse.org-6476cff6 | openSUSE:13.2:Update                    | Yes     | (r ) Yes  | Yes    
11 | http-download.opensuse.org-7f0567ef | home:antonbatenev:tox                   | Yes     | (r ) Yes  | Yes    
12 | linuxdownload.adobe.com-linux       | Adobe Flash Plugin                      | Yes     | ( p) Yes  | Yes    
13 | openSUSE-42.1-0                     | openSUSE-42.1-0                         | No      | ----      | No     
14 | repo-debug                          | openSUSE-Leap-42.1-Debug                | No      | ----      | Yes    
15 | repo-debug-non-oss                  | openSUSE-Leap-42.1-Debug-Non-Oss        | No      | ----      | Yes    
16 | repo-debug-update                   | openSUSE-Leap-42.1-Update-Debug         | No      | ----      | Yes    
17 | repo-debug-update-non-oss           | openSUSE-Leap-42.1-Update-Debug-Non-Oss | No      | ----      | Yes    
18 | repo-source                         | openSUSE-Leap-42.1-Source               | No      | ----      | Yes    
19 | repo-update                         | openSUSE-Leap-42.1-Update               | No      | ----      | Yes    


Also I can’t update from GNOME Package Updater application. It shows this message: “ABORT request: Aborting requested by user”.

Now GNOME Package Updater application shows this errors:
“nothing provides libgpg-error.so.0(GPG_ERROR_1.0)(64bit) needed by libksba8-1.3.1-4.1.x86_64
nothing provides libicuuc.so.53.1()(64bit) needed by libmspub-0_1-1-0.1.2-2.4.1.x86_64
nothing provides perl(:MODULE_COMPAT_5.20.1) needed by perl-YAML-LibYAML-0.59-2.4.1.x86_64
nothing provides perl(:MODULE_COMPAT_5.20.1) needed by perl-IO-Socket-SSL-1.997-2.3.1.noarch
nothing provides libicuuc.so.53.1()(64bit) needed by libwebkitgtk-3_0-0-2.4.9-10.1.x86_64
nothing provides perl(:MODULE_COMPAT_5.20.1) needed by perl-XML-LibXML-2.0121-2.3.1.x86_64
gpg2-lang-2.0.26-2.3.1.noarch requires gpg2 = 2.0.26, but this requirement cannot be provided
nothing provides libexiv2.so.13()(64bit) needed by kdebase4-runtime-15.08.3-19.1.x86_64
cron-4.2-57.5.x86_64 requires cronie = 1.4.11-57.5, but this requirement cannot be provided
nothing provides libgpg-error.so.0(GPG_ERROR_1.0)(64bit) needed by gpg2-2.0.26-2.3.1.x86_64
patch:openSUSE-2015-879-1.noarch conflicts with kernel-default-base.x86_64 < 4.1.13-5.1 provided by kernel-default-base-4.1.12-1.1.x86_64”

Well, this list is next to useless, please rather post the output of “zypper lr -d” to also show the repo URLs.

But, you probably broke your system by adding the 13.2 update repo (#10).
Unfortunately, there’s no easy way to fix this if zypper doesn’t work anymore.

I’m afraid your only option is a new installation. I would suggest to boot from a Leap 42.1 installation medium and choose “Upgrade” so that you keep your installed packages, that should fix it.

In the future, please only add repositories intended for your openSUSE version (unless you are 1000% sure about what you are doing).

“13.2 update” repo installed automatically with Tox application (and its repo).

Thank you.
I’ve done “Upgrade” the system.
Now GNOME Package Updater application works.

Then you probably clicked on the 1-click install for 13.2.

As indicated, you should only use 1-click installs for your distribution version, as they normally also add additional repos.
Or at least deselect wrong repos in the dialog that appears.

But tox is available for Leap 42.1 as well, so there’s no need (and actually a bad idea) to install the 13.2 version.

Thank you.
I’ve done “Upgrade” the system.
Now GNOME Package Updater application works.

You’re welcome.

Glad to hear that your system is working again… :slight_smile:

Hi, I have the same problem with the GUI terminal (MATE terminal). There is no connection with the repositories via GUI terminal. But, when I use Xterm everything works well.
What’s the problem with GUI Terminal? How to fix it?
These are my repos list:

zypper lr -d
#  | Alias                               | Name                                     | Enabled | GPG Check | Refresh | Priority | Type   | URI                                                                                    | Service
---+-------------------------------------+-----------------------------------------+---------+-----------+---------+----------+--------+--------------------------------------------------------------------------------------+--------
 1 | Education                           | Education                                | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/Education/openSUSE_Leap_42.1/               |        
 2 | MATE                                | MATE                                     | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/X11:/MATE:/Current/openSUSE_Leap_42.1/      |        
 3 | MEGAsync                            | MEGAsync                                 | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://mega.nz/linux/MEGAsync/openSUSE_Leap_42.1/                                     |        
 4 | Virtualization                      | Virtualization                           | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/Virtualization/openSUSE_Leap_42.1/          |        
 5 | Wine                                | Wine                                     | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/Emulators:/Wine/openSUSE_Leap_42.1/         |        
 6 | ftp.gwdg.de-suse                    | Packman Repository                       | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  ftp://packman.inode.at/suse/openSUSE_Leap_42.1/                                       |        
 7 | http-download.opensuse.org-3539f5d5 | science                                  | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/science/openSUSE_Leap_42.1/                 |        
 8 | http-download.opensuse.org-5c17ed01 | home:DarkSS                              | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/home:/DarkSS/openSUSE_Leap_42.1/            |        
 9 | http-download.opensuse.org-cc41d517 | home:Lazy_Kent:devel                     | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/home:/Lazy_Kent:/devel/openSUSE_Leap_42.1/  |        
10 | http-download.opensuse.org-d85389bb | home:ecsos:tox                           | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/repositories/home:/ecsos:/tox/openSUSE_Leap_42.1/        |        
11 | openSUSE-42.1-0                     | openSUSE-42.1-0                          | No      | ----      | No      |   99     | yast2  |  cd:///?devices=/dev/disk/by-id/ata-PLDS_DVD-RW_DS8ABSH_DX0E66026L1CB4207PVB           |        
12 | repo-debug                          | openSUSE-Leap-42.1-Debug                 | No      | ----      | Yes     |   99     | NONE   |  http://download.opensuse.org/debug/distribution/leap/42.1/repo/oss/                   |        
13 | repo-debug-non-oss                  |  openSUSE-Leap-42.1-Debug-Non-Oss        | No      | ----      | Yes     |    99     | NONE   |  http://download.opensuse.org/debug/distribution/leap/42.1/repo/non-oss/               |        
14 | repo-debug-update                   |  openSUSE-Leap-42.1-Update-Debug         | No      | ----      | Yes     |    99     | NONE   |  http://download.opensuse.org/debug/update/leap/42.1/oss                               |        
15 | repo-debug-update-non-oss           |  openSUSE-Leap-42.1-Update-Debug-Non-Oss | No      | ----      | Yes     |    99     | NONE   |  http://download.opensuse.org/debug/update/leap/42.1/non-oss/                          |        
16 | repo-non-oss                        | openSUSE-Leap-42.1-Non-Oss               | No      | ----      | Yes     |   99     | NONE   |  http://download.opensuse.org/distribution/leap/42.1/repo/non-oss/                     |        
17 | repo-oss                            | openSUSE-Leap-42.1-Oss                   | Yes     | (r ) Yes  | Yes     |   99     | yast2  |  http://download.opensuse.org/distribution/leap/42.1/repo/oss/                         |        
18 | repo-source                         | openSUSE-Leap-42.1-Source                | No      | ----      | Yes     |   99     | NONE   |  http://download.opensuse.org/source/distribution/leap/42.1/repo/oss/                  |        
19 | repo-update                         | openSUSE-Leap-42.1-Update                | Yes     | (r ) Yes  | Yes     |   99     | rpm-md |  http://download.opensuse.org/update/leap/42.1/oss/                                    |        
20 | repo-update-non-oss                 |  openSUSE-Leap-42.1-Update-Non-Oss       | Yes     | (r ) Yes  | Yes     |    99     | rpm-md |  http://download.opensuse.org/update/leap/42.1/non-oss/             

For example “zypper up” command and its result in MATE terminal:


zypper up
**Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Education/openSUSE_Leap_42.1/repodata/repomd.xml'.**

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Education/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Education/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (r): 
Trying again...
Timeout exceeded when accessing 'http://download.opensuse.org/repositories/Education/openSUSE_Leap_42.1/repodata/repomd.xml'.

Abort, retry, ignore? [a/r/i] (a): 
Trying again...
ABORT request: Aborting requested by user
linux-0k86:/home/andranik # 


**Other example with “youtube-dl” command in MATE Terminal:
**

youtube-dl https://www.youtube.com/watch?v=zC445gxbUvg
https://www.youtube.com/watch?v=zC445gxbUvg

**ERROR: Unable to download webpage: <urlopen error [Errno 110] Connection timed out> (caused by URLError(error(110, 'Connection timed out'),))****Here are the same examples and commands in Xterm:
"zypper up" command:****"youtube-dl command example:**https://www.youtube.com/watch?v= zC445gxbUvg: Downloading webpage
https://www.youtube.com/watch?v= zC445gxbUvg: Downloading video info webpage
https://www.youtube.com/watch?v= zC445gxbUvg: Extracting video information
https://www.youtube.com/watch?v= zC445gxbUvg: Downloading MPD manifest
https://www.youtube.com/watch?v= Merging formats into "Զինված խումբը մարտական զենք է տվել ոստիկաններին,օդ  են  կրակել,հարգել  զոհված սպայի հիշատակը-zC445gxbUvg.mp4"
Deleting original file Զինված խումբը մարտական զենք է տվել ոստիկաններին,օդ  են  կրակել,հարգել  զոհված սպայի հիշատակը-zC445gxbUvg.f137.mp4 (pass -k to keep)
Deleting original file Զինված խումբը մարտական զենք է տվել ոստիկաններին,օդ  են  կրակել,հարգել  զոհված սպայի հիշատակը-zC445gxbUvg.f140.m4a (pass -k to keep)
linux-0k86:/home/andranik # 
linux-0k86:/home/andranik # 

As you can see, in Xterm everything works well.
Please, can you tell me what should I do?