Weird behaviour after zypper up

**krpan** · 30-Sep-2019, 22:38

Hi:
After zypper up last week I found weird things in Leap 15.1. Every time I open the konsole as a user I get the error:

Code:

:~> bash
 bash: mc: line 1: syntax error: unexpected end of file
 bash: error importing function definition for `mc'

Running yast2 from konsole gives the following error:

Code:

# yast2
 /bin/bash: mc: line 1: syntax error: unexpected end of file
 /bin/bash: error importing function definition for `mc'
 QStandardPaths: wrong ownership on runtime directory /run/user/1000, 1000 instead of 0
 QStandardPaths: wrong ownership on runtime directory /run/user/1000, 1000 instead of 0
 QStandardPaths: wrong ownership on runtime directory /run/user/1000, 1000 instead of 0

I entered the following commands:

Code:

# ls -l /run/user/
total 0
drwxr-xr-x 3 root  root   60 sep 30 15:59 0
drwx------ 9 my_user users 280 sep 30 15:49 1000

Code:

# ls -la /run/user/
 total 0
 drwxr-xr-x  4 root  root    80 sep 30 15:53 .
 drwxr-xr-x 34 root  root  1020 sep 30 16:09 ..
 drwxr-xr-x  3 root  root    60 sep 30 15:59 0
 drwx------  9 my-user users  280 sep 30 15:49 1000

And the worst thing is I can not run yast by clicking on icon in Plasma. The window pops up requesting a user password. I enter the correct password but same window pops up again, and again etc.
Any help would be greatly appreciated.

Bojan

**mrmazda** · 01-Oct-2019, 01:47

Please paste here using code tags:

Code:

zypper lr -d

**verstraete_kenny** · 01-Oct-2019, 11:50

exactly the same weird behaviour here.

my output of

Code:

zypper lr -d

is:

Code:

#  | Alias                                | Name                                 | Enabled | GPG Check | Refresh | Priority | Type   | URI                                                                             | Service
---+--------------------------------------+--------------------------------------+---------+-----------+---------+----------+--------+---------------------------------------------------------------------------------+--------
 1 | KDE:/Frameworks5/openSUSE_Leap_15.1/ | KDE:/Frameworks5/openSUSE_Leap_15.1/ | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/repositories/KDE:/Frameworks5/openSUSE_Leap_15.1/ |        
 2 | KDE:/Qt5/openSUSE_Leap_15.1/         | KDE:/Qt5/openSUSE_Leap_15.1/         | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/repositories/KDE:/Qt5/openSUSE_Leap_15.1/         |        
 3 | Printing/openSUSE_Leap_15.1/         | Printing/openSUSE_Leap_15.1/         | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/repositories/Printing/openSUSE_Leap_15.1/         |        
 4 | basearch                             | Anydesk                              | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://rpm.anydesk.com/opensuse/x86_64/                                         |        
 5 | beid-release                         | Belgian eID package archive          | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://files.eid.belgium.be/rpm/opensuse/15.1                                   |        
 6 | google-chrome                        | google-chrome                        | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://dl.google.com/linux/chrome/rpm/stable/x86_64                             |        
 7 | mozilla/openSUSE_Leap_15.1/          | mozilla/openSUSE_Leap_15.1/          | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/repositories/mozilla/openSUSE_Leap_15.1/          |        
 8 | openSUSE_Leap_15.1                   | LibreOffice:/6.3/openSUSE_Leap_15.1/ | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/repositories/LibreOffice:/6.3/openSUSE_Leap_15.1/ |        
 9 | openSUSE_Leap_15.1                   | X11:/XOrg/openSUSE_Leap_15.1/        | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/repositories/X11:/XOrg/openSUSE_Leap_15.1/        |        
10 | opensuse-guide.org-repo              | Libdvdcss Repository                 | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://opensuse-guide.org/repo/openSUSE_Leap_15.1/                             |        
11 | packman.inode.at-suse                | Packman Repository                   | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://packman.inode.at/suse/openSUSE_Leap_15.1/                                |        
12 | repo-non-oss                         | openSUSE-Leap-15.1-Non-Oss           | Yes     | (r ) Yes  | No      |   99     | rpm-md | https://download.opensuse.org/distribution/leap/15.1/repo/non-oss/              |        
13 | repo-oss                             | openSUSE-Leap-15.1-Oss               | Yes     | (r ) Yes  | No      |   99     | rpm-md | https://download.opensuse.org/distribution/leap/15.1/repo/oss/                  |        
14 | repo-update                          | openSUSE-Leap-15.1-Update            | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/update/leap/15.1/oss/                             |        
15 | repo-update-non-oss                  | openSUSE-Leap-15.1-Update-Non-Oss    | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.opensuse.org/update/leap/15.1/non-oss/                         |        
16 | wavebox                              | Wavebox - x86_64                     | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://wavebox.io/dl/client/repo/yum/

Not that exotic as you can see...

**nrickert** · 01-Oct-2019, 13:24

At a guess, some of those error messages might be coming from:
"/etc/profile.d/mc.sh"
which is probably being run during shell startup.

I have not been able to reproduce the problem here.

**mrmazda** · 01-Oct-2019, 13:42

Originally Posted by verstraete_kenny

Not that exotic as you can see...

That's a lot of unrelated repos that haven't gone through QA as an integrated unit. Something(s) from one or more could be in conflict with one or more others.

**krpan** · 02-Oct-2019, 10:00

Originally Posted by mrmazda

Please paste here using code tags:

Code:

zypper lr -d

Output:

Code:

:~> zypper lr -d
#  | Alias                               | Name                                                      | Enabled | GPG Check | Refresh | Priority | Type   | URI                                                                                             | Service
---+-------------------------------------+-----------------------------------------------------------+---------+-----------+---------+----------+--------+-------------------------------------------------------------------------------------------------+--------
 1 | KDE-Applications                    | KDE-Applications                                          | Yes     | (r ) Yes  | Yes     |   75     | rpm-md | https://download.opensuse.org/repositories/KDE:/Applications/KDE_Frameworks5_openSUSE_Leap_15.1 |        
 2 | KDE-Frameworks                      | KDE-Frameworks                                            | Yes     | (r ) Yes  | Yes     |   75     | rpm-md | https://download.opensuse.org/repositories/KDE:/Frameworks5/openSUSE_Leap_15.1                  |        
 3 | KDE-Qt5                             | KDE-Qt5                                                   | Yes     | (r ) Yes  | Yes     |   75     | rpm-md | https://download.opensuse.org/repositories/KDE:/Qt5/openSUSE_Leap_15.1                          |        
 4 | download.nvidia.com-leap            | nVidia Graphics Drivers                                   | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | https://download.nvidia.com/opensuse/leap/15.1                                                  |        
 5 | http-download.opensuse.org-45843d34 | Application:Geo                                           | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/repositories/Application:/Geo/openSUSE_Leap_15.1/                  |        
 6 | http-download.opensuse.org-f18b3e14 | openSUSE:Leap:15.1:Update                                 | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/update/leap/15.1/oss/                                              |        
 7 | openSUSE-Leap-15.1-1                | openSUSE-Leap-15.1-1                                      | No      | ----      | ----    |   99     | rpm-md | hd:/?device=/dev/disk/by-id/usb-Generic_Flash_Disk_B32E0B4E-0:0-part2                           |        
 8 | openSUSE_Leap_15.1                  | Fonti                                                     | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/repositories/M17N:/fonts/openSUSE_Leap_15.1/                       |        
 9 | openSUSE_Leap_15.1_1                | LibreOffice                                               | Yes     | (r ) Yes  | Yes     |   75     | rpm-md | http://download.opensuse.org/repositories/LibreOffice:/6.3/openSUSE_Leap_15.1/                  |        
10 | openSUSE_Leap_15.1_2                | Graphics                                                  | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/repositories/graphics/openSUSE_Leap_15.1/                          |        
11 | openSUSE_Leap_15.1_3                | Science                                                   | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/repositories/science/openSUSE_Leap_15.1/                           |        
12 | openSUSE_Leap_15.1_4                | KDE Extra                                                 | Yes     | (r ) Yes  | Yes     |   75     | rpm-md | https://download.opensuse.org/repositories/KDE:/Extra/openSUSE_Leap_15.1/                       |        
13 | openSUSE_Leap_15.1_5                | Mozilla                                                   | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/repositories/mozilla/openSUSE_Leap_15.1/                           |        
14 | packman.inode.at-suse               | Packman Repository                                        | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://packman.inode.at/suse/openSUSE_Leap_15.1/                                                |        
15 | proxsign                            | SETCCE proXSign® Component Suite for (openSUSE_Leap_15.1) | Yes     | ( p) Yes  | No      |   99     | NONE   | http://public.setcce.si/proxsign/repo/openSUSE_Leap_15.1/                                       |        
16 | repo-debug                          | Debug Repository                                          | No      | ----      | ----    |   99     | rpm-md | http://download.opensuse.org/debug/distribution/leap/15.1/repo/oss/                             |        
17 | repo-debug-non-oss                  | Debug Repository (Non-OSS)                                | No      | ----      | ----    |   99     | rpm-md | http://download.opensuse.org/debug/distribution/leap/15.1/repo/non-oss/                         |        
18 | repo-debug-update                   | Update Repository (Debug)                                 | No      | ----      | ----    |   99     | rpm-md | http://download.opensuse.org/debug/update/leap/15.1/oss/                                        |        
19 | repo-debug-update-non-oss           | Update Repository (Debug, Non-OSS)                        | No      | ----      | ----    |   99     | rpm-md | http://download.opensuse.org/debug/update/leap/15.1/non-oss/                                    |        
20 | repo-non-oss                        | Non-OSS Repository                                        | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/distribution/leap/15.1/repo/non-oss/                               |        
21 | repo-oss                            | Main Repository                                           | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/distribution/leap/15.1/repo/oss/                                   |        
22 | repo-source                         | Source Repository                                         | No      | ----      | ----    |   99     | rpm-md | http://download.opensuse.org/source/distribution/leap/15.1/repo/oss/                            |        
23 | repo-source-non-oss                 | Source Repository (Non-OSS)                               | No      | ----      | ----    |   99     | rpm-md | http://download.opensuse.org/source/distribution/leap/15.1/repo/non-oss/                        |        
24 | repo-update                         | Main Update Repository                                    | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/update/leap/15.1/oss/                                              |        
25 | repo-update-non-oss                 | Update Repository (Non-Oss)                               | Yes     | (r ) Yes  | Yes     |   99     | rpm-md | http://download.opensuse.org/update/leap/15.1/non-oss/

There is still existing problem with running Yast from Krunner. The window pops up requesting a user password. I enter the correct password but same window pops up again, and endlessly again.

**tsu2** · 02-Oct-2019, 10:44

Curiously,
The only search hit I got that matches your problem affected an old version of openSUE...
https://bugs.eclipse.org/bugs/show_bug.cgi?id=476888

Do you have Midnight Commander or Eclipse installed?

TSU

**krpan** · 02-Oct-2019, 22:22

Originally Posted by tsu2

Curiously,
The only search hit I got that matches your problem affected an old version of openSUE...
https://bugs.eclipse.org/bugs/show_bug.cgi?id=476888

Do you have Midnight Commander or Eclipse installed?

TSU

Yes, I have MC installed but not Eclipse. I'll try to uninstall MC and see the result. Will post the outcome.

**krpan** · 03-Oct-2019, 08:25

Originally Posted by krpan

Yes, I have MC installed but not Eclipse. I'll try to uninstall MC and see the result. Will post the outcome.

Uninstalling mc solved all problems.

Thanks everybody for tips.

**mrmazda** · 03-Oct-2019, 09:56

That would never do here. It's a masterful shell, among other things. Without MC, PC admin is all but impossible. It's virtually always open, usually more than one instance. Something somewhere is really messed up that removing it can un-break anything.