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Thread: hdf5.h in OpenSUSE Leap for PyMC3 Installation

  1. #1
    Join Date
    Nov 2016
    Location
    Dresden
    Posts
    12

    Exclamation hdf5.h in OpenSUSE Leap for PyMC3 Installation

    Hey guys,

    I'm struggling with the installation of PyMC3 for Python 3.4 in Leap 42.2 - obviously hdf5.h is missed, so the dependency h5py is not installable.
    The installation via pip3 ends with:

    Code:
        In file included from /tmp/pip-build-1yb351yd/h5py/h5py/defs.c:300:0:
        /tmp/pip-build-1yb351yd/h5py/h5py/api_compat.h:27:18: fatal error: hdf5.h: No such file or directory
         #include "hdf5.h"
                          ^
        compilation terminated.
        Autodetection skipped [libhdf5.so: cannot open shared object file: No such file or directory]
        error: command 'gcc' failed with exit status 1
    
    
    In tumbleweed it works fine. What can I do here? All libhdf5-dev libs seem to be missed in Leap.

    Thx in advance,
    Reiti

  2. #2
    Join Date
    May 2012
    Location
    Finland
    Posts
    2,004

    Default Re: hdf5.h in OpenSUSE Leap for PyMC3 Installation

    On 42.2, hdf5-devel contains all these files.
    .: miuku #suse @ irc.freenode.net
    :: miuku@opensuse.org

    .: h​ttps://download.opensuse.org/repositories/home:/Miuku/

  3. #3
    Join Date
    Nov 2016
    Location
    Dresden
    Posts
    12

    Default Re: hdf5.h in OpenSUSE Leap for PyMC3 Installation

    thx! solved the problem

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